Basic Information
VIS ID
TVIS30009919
Fusion event
HIV-CFAP47 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
36177981/36159864 (Hg38)
End
36177981/36159864 (Hg38)
Orient
-
Location type
Intronic
Target gene
CFAP47
Nearest miRNA
hsa-mir-23c/Upstream/3518305; hsa-let-7f-2/Downstream/1864031;
Nearest TSS
ENST00000429181/Upstream/94203; ENST00000630521/Downstream/201462;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/533664, chrX-CpG: 90/Downstream/797568
Upstream sequence
TAGTTTATGCAGTAAAAAAGGACTTTCCTGTTCTCTGGCAGGAACTTTCATCAGTTTATCTTGTGTGTCCTGTAGATCAAATCTATTATAAAGATAAGAC
Downstream sequence
TAATGCTGGcatttattgagaggtgacgatgttccagacagagttctaagtatttCTTTTTCAAAGGGTGGGGAAGAGAGATTTTTAAATCTTTATAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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