Basic Information
VIS ID
TVIS30009920
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
38944831/39085578 (Hg38)
End
38944831/39085578 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/1061592; hsa-let-7f-2/Downstream/575638;
Nearest TSS
ENST00000429181/Upstream/281695; ENST00000447651/Downstream/214208;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/280067, chrX-CpG: 40/Downstream/76831
Nearby gene
LINC01281(No orient, 219379)
Upstream sequence
aatagtcacaactttctggaaattaacaattttaaacaaccaatggatcaaagaagaaattacaagggaaatgagaaaatgctgaaagatgaatgaaaat
Downstream sequence
aaatacacaatacatcaaaacttatggaactcagtaaaagcaatgatcaggaaaatatgtacagaaaaaaaagcttacatttaaaaacaaaacagatctc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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