Fusion event
HIV-LINC01281 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
39184314/39325060 (Hg38)
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-23c/Upstream/1301074; hsa-let-7f-2/Downstream/336156;
Upstream sequence
AGAGGCCAGAACATAAATTAAAATTTACTCTACTTTCCTGACAAAAGAAAATTTTAAAACACCGAACCCTTCCTGCAAGGGACATCTCTATGTAAATGAT
Downstream sequence
GGAAacaagatcgcataatggtttggagcaaggactttcacatcaagaagacccgggtttgagtctcaactctatcactttccagttgtttaatgtaaaa
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.