Basic Information
VIS ID
TVIS30009926
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
39894737/40035484 (Hg38)
End
39894737/40035484 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/197871; hsa-let-7f-2/Downstream/5710673;
Nearest TSS
ENST00000429181/Upstream/26208; ENST00000447570/Downstream/27453;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/19971, chrX-CpG: 65/Downstream/48019
Nearby gene
BCOR(No orient, 15762)
Upstream sequence
ttgccctctaacaaacaggggacagtgtgtgaccatcaaaagtaggtcataaaaggaagtacagctgcgtgtggtgactcatgcctgtaatcctagctac
Downstream sequence
tcaggaggcgaaggcaggaggatcacttgaggccaggagtttgacaccagcctgggcaagatactgagacccccatctcttctgaaaattaaaaaattag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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