Basic Information
VIS ID
TVIS30009927
Fusion event
HIV-ATP6AP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
40451811/40592559 (Hg38)
End
40451811/40592559 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP6AP2
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-26b-5p ; hsa-mir-1226-3p ; hsa-mir-140-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-4735-5p ; hsa-mir-6832-3p ; hsa-mir-4640-3p
Nearest miRNA
hsa-mir-1587/Upstream/754946; hsa-let-7f-2/Downstream/5153598;
Nearest TSS
ENST00000429181/Upstream/1289; ENST00000479120/Downstream/3295;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/11106, chrX-CpG: 81/Downstream/30563
Upstream sequence
ttggtcaacatagcaagaccctatctctagggggaaaaaaaaagaaagaAAGAGAAAAAATTTGTGAAAAAAAGGAAGGAACAGAAACTATGAGGGAGTT
Downstream sequence
ATAAGACATTTTTGATACATGGTGCTTTAGCTGATACttcaaaatatttcataatttatattgtgattctttaacccatgagttatgtagaagtattttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate