Basic Information
VIS ID
TVIS30009932
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
42824999/42965750 (Hg38)
End
42824999/42965750 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/3128137; hsa-let-7f-2/Downstream/2780407;
Nearest TSS
ENST00000429181/Upstream/187503; ENST00000440955/Downstream/211244;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/187494, chrX-CpG: 54/Downstream/689032
Nearby gene
PPP1R2C(No orient, 187513)
Upstream sequence
tttttttacATCTTACTTTCCTTATACATTTTtgatacagtctggatatttgtcccccacaaattgcatattgaattgtaatccccaatgctgaaggttt
Downstream sequence
ggacctggtgataggtgtttggattatgggggcagatctttcatggcttagagctgtctttgtgataatgagttttcatgagatctggtcatacaaaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate