Basic Information
VIS ID
TVIS30009933
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
42842512/42983263 (Hg38)
End
42842512/42983263 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/3145650; hsa-let-7f-2/Downstream/2762894;
Nearest TSS
ENST00000429181/Upstream/205016; ENST00000440955/Downstream/193731;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/205007, chrX-CpG: 54/Downstream/671519
Upstream sequence
aggccacacattctaatcccatcaccttgagggttaggatttttacatttgaattgtgagggacacaaacattcagaccatagtaaatactgtatataac
Downstream sequence
aaagagaattaataaatgactgctatatctgacagcataaatgaatctcagaaacataatattaagcaaaaaagcagacacacactgctaatgctttgca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate