VISDB Viral Integration Site DataBase

VIS ID

TVIS30009937

Fusion event

HIV-SLC9A7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

p11.3

Reference genome

Start

End

46551583/46692148 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-455-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-1292-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-1227-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-455-5p ; hsa-mir-4438 ; hsa-mir-562 ; hsa-mir-4703-3p ; hsa-mir-548m ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-4435 ; hsa-mir-7977 ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-1270 ; hsa-mir-1273e ; hsa-mir-3689d ; hsa-mir-4459 ; hsa-mir-4537 ; hsa-mir-4683 ; hsa-mir-5186 ; hsa-mir-6134 ; hsa-mir-620 ; hsa-mir-6499-3p ; hsa-mir-665 ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p

Nearest miRNA

hsa-mir-1587/Upstream/945024; hsa-let-7f-2/Downstream/895281;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/116681, chrX-CpG: 117/Downstream/66430

Upstream sequence

TTGGTAAACAGGCCAAAAAGTAAGCAACCTTACTCTATCAGTTTTCTTTTAATAAGAATTAAAAGACTGCAAGGAAGACAGGTTTCATGGAGCTAGCAAC

Downstream sequence

CTTACTATTAAAAATTCCCATTAAAATGGGAAATAAGTATCTGCCATATAATGGGCTAAACCTGAAGTGTGAGACACAAGCCACTGATTTTATTGCTCAA