Basic Information
VIS ID
TVIS30009942
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
57718538/57692105 (Hg38)
End
57718538/57692105 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/2240523; hsa-mir-105-1/Downstream/6093897;
Nearest TSS
ENST00000429181/Upstream/11845; ENST00000451979/Downstream/218715;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/99210, chrX-CpG: 108/Downstream/217139
Nearby gene
ZXDB(No orient, 94628)
Upstream sequence
atttttttctaggttatacaatttattggcatataattgcttatagtagtttcttaagataatttgtatttctctggtatcagaaataaaattcattgta
Downstream sequence
ataaaatatgaagaagtaaattgtctctattttctgtcaacatgatcttatataaagaatgccataaggactcaaccaaaaaaatcttgtttgaattgat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate