Basic Information
VIS ID
TVIS30009945
Fusion event
HIV-LAS1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q12
Reference genome
GRCh37/hg19
Start
64750518/65530638 (Hg38)
End
64750518/65530638 (Hg38)
Orient
-
Location type
Intronic
Target gene
LAS1L
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-17-5p
Nearest miRNA
hsa-let-7f-2/Upstream/1744551; hsa-mir-105-1/Downstream/488232;
Nearest TSS
ENST00000429181/Upstream/7021; ENST00000439474/Downstream/4116;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/122473, chrX-CpG: 43/Downstream/3798
Upstream sequence
tggctcatgcctgtaatcctagcactttgggaggctgaggcgggcagatcatgaggtcaggagttcgagactagcctgaccaacatgatgaaaccccatc
Downstream sequence
gctactaaaaatacaaaaaaaaaaaattagccaggcatggaggcgcgtgcctgtaatcccagctactcaggaggtggagacaggagaatcacttgaaccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate