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TVIS30009946
Basic Information
VIS ID
TVIS30009946
Fusion event
HIV-MSN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q12
Reference genome
GRCh37/hg19
Start
64923963/65704101 (Hg38)
End
64923963/65704101 (Hg38)
Orient
+
Location type
Intronic
Target gene
MSN
miRNAs that regulate target gene
hsa-mir-192-5p
;
hsa-mir-200c-3p
;
hsa-mir-133a-3p
;
hsa-mir-124-3p
;
hsa-mir-215-5p
;
hsa-mir-615-3p
;
hsa-let-7b-5p
;
hsa-mir-200b-3p
;
hsa-mir-6746-5p
;
hsa-mir-30b-3p
;
hsa-mir-6772-3p
;
hsa-mir-3691-5p
;
hsa-mir-3165
;
hsa-mir-3689d
;
hsa-mir-6851-5p
;
hsa-mir-4448
;
hsa-mir-4268
;
hsa-mir-6134
;
hsa-mir-4524a-3p
;
hsa-mir-6770-5p
;
hsa-mir-92a-2-5p
;
hsa-mir-6748-5p
;
hsa-mir-6766-5p
;
hsa-mir-6756-5p
;
hsa-mir-6745
;
hsa-mir-363-5p
;
hsa-mir-6846-5p
;
hsa-mir-6848-5p
;
hsa-mir-4697-5p
;
hsa-mir-4488
;
hsa-mir-1237-5p
;
hsa-mir-4489
;
hsa-mir-4795-5p
;
hsa-mir-664b-5p
;
hsa-mir-6764-5p
;
hsa-mir-1915-3p
;
hsa-mir-7113-5p
;
hsa-mir-9500
;
hsa-mir-6824-5p
;
hsa-mir-4536-5p
;
hsa-mir-939-5p
;
hsa-mir-1343-5p
;
hsa-mir-3175
;
hsa-mir-920
;
hsa-mir-6726-5p
;
hsa-mir-5591-5p
;
hsa-mir-4300
;
hsa-mir-6731-5p
;
hsa-mir-8085
;
hsa-mir-6500-5p
;
hsa-mir-4633-3p
;
hsa-mir-6783-5p
;
hsa-mir-4779
;
hsa-mir-122-5p
;
hsa-mir-1226-5p
;
hsa-mir-1321
;
hsa-mir-144-3p
;
hsa-mir-1914-3p
;
hsa-mir-2467-5p
;
hsa-mir-3126-5p
;
hsa-mir-3144-5p
;
hsa-mir-3148
;
hsa-mir-3151-5p
;
hsa-mir-3191-3p
;
hsa-mir-338-3p
;
hsa-mir-4419a
;
hsa-mir-4424
;
hsa-mir-4433b-3p
;
hsa-mir-4435
;
hsa-mir-4447
;
hsa-mir-4472
;
hsa-mir-4510
;
hsa-mir-4530
;
hsa-mir-4534
;
hsa-mir-4652-5p
;
hsa-mir-4716-3p
;
hsa-mir-4739
;
hsa-mir-4756-5p
;
hsa-mir-5194
;
hsa-mir-574-5p
;
hsa-mir-6127
;
hsa-mir-6129
;
hsa-mir-6130
;
hsa-mir-6133
;
hsa-mir-615-5p
;
hsa-mir-625-5p
;
hsa-mir-651-3p
;
hsa-mir-6734-5p
;
hsa-mir-6738-5p
;
hsa-mir-6742-5p
;
hsa-mir-6794-5p
;
hsa-mir-6796-5p
;
hsa-mir-6798-5p
;
hsa-mir-6800-5p
;
hsa-mir-6802-5p
;
hsa-mir-6810-5p
;
hsa-mir-6822-3p
;
hsa-mir-6830-5p
;
hsa-mir-6834-5p
;
hsa-mir-6875-5p
;
hsa-mir-7106-5p
;
hsa-mir-765
;
hsa-mir-766-3p
;
hsa-mir-8065
;
hsa-mir-2115-5p
;
hsa-mir-3185
;
hsa-mir-345-3p
;
hsa-mir-4725-5p
Nearest miRNA
hsa-let-7f-2/Upstream/1918014; hsa-mir-105-1/Downstream/314769;
Nearest TSS
ENST00000429181/Upstream/36431;
ENST00000424241/Downstream/295650;
Nearest CpG islands
None/Target,
chrX-CpG: 62/Upstream/36131
,
chrX-CpG: 45/Downstream/117953
Upstream sequence
CAGTGTGCTTCAGAAGTATGATGCTGGAGGTTGCTGGAGTCTGTTCCTAAGCAGAGGGAATAGAGCCCTCTTCTGGCACCCTGGGCAGAGCTGGCATATT
Downstream sequence
CAGGCAGCCAAAAATGGTCAGTTTCCAGTCTACAAATACTTCCTGTAAAACTTGCTGGCAGGAAGCTGGGTCAAGCAGGAAAGTGACGCTAAAGAGTGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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