Basic Information
VIS ID
TVIS30009949
Fusion event
HIV-KIF4A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
69514371/70294521 (Hg38)
End
69514371/70294521 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIF4A
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-222-3p
Nearest miRNA
hsa-let-7f-2/Upstream/271598; hsa-mir-105-1/Downstream/3923856;
Nearest TSS
ENST00000429181/Upstream/4007; ENST00000472623/Downstream/128510;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/4409, chrX-CpG: 81/Downstream/139336
Upstream sequence
cacataaactagtaacaatcatttattattatgaagcgttacatactgtacatagttggatgtgctgtacttttatatgactagcagtgaagtaggtttc
Downstream sequence
tttaccccagcatcaacacaaacatgtaacatgttgcactgcaatattataatggctaagtcaataagcaacaggaatttttcaccatcgtgtatacatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate