VISDB Viral Integration Site DataBase

VIS ID

TVIS30009952

Fusion event

HIV-PHKA1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q13.1

Reference genome

Start

End

71823512/72603662 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-103a-3p ; hsa-mir-98-5p ; hsa-mir-16-5p ; hsa-mir-769-3p ; hsa-mir-421 ; hsa-mir-484 ; hsa-mir-25-3p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-1272 ; hsa-mir-576-5p ; hsa-mir-302c-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-107 ; hsa-mir-646 ; hsa-mir-4735-5p ; hsa-mir-503-5p ; hsa-mir-32-3p ; hsa-mir-15b-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-5571-5p ; hsa-mir-3941 ; hsa-mir-4719 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-511-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-1303

Nearest miRNA

hsa-let-7f-2/Upstream/2580739; hsa-mir-105-1/Downstream/1614715;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/296213, chrX-CpG: 32/Downstream/76942

Upstream sequence

TGTATATATGCAGATAAACTAAAATAATTAAAACTTCTCAGCCTGGAAATAATAGAGACTTAAAAGAGATAGATTTGAATCCATGAAATTATGAATATAT

Downstream sequence

GAGGATAACTTGAACATGTTAATCAGCATCACACATTTATTAAAAGTAGACTACATGCAGGTCATCATTTTAAGTAACATTTGTGCAAGCAGGTATGACG