Basic Information
VIS ID
TVIS30009954
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
72919847/73700012 (Hg38)
End
72919847/73700012 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/3677089; hsa-mir-105-1/Downstream/518365;
Nearest TSS
ENST00000429181/Upstream/136560; ENST00000604411/Downstream/92193;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/136683, chrX-CpG: 41/Downstream/405317
Nearby gene
CHIC1(No orient, 12903)
Nearest cancer related gene
CHIC1(OG, No orient, 12903)
Upstream sequence
gccctcagaaataatgctgcatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgc
Downstream sequence
tgggaaaactgctagccatatgtagaaagctgaaactggatcccttccttataccttatacaaaaattaattccagatggattaaagacttaaacgttag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate