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Viral Integration Site DataBase
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TVIS30009959
Basic Information
VIS ID
TVIS30009959
Fusion event
HIV-ATP7A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
77229345/77973848 (Hg38)
End
77229345/77973848 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP7A
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-148b-3p
;
hsa-mir-9-5p
;
hsa-mir-122-5p
;
hsa-mir-320a
;
hsa-mir-495-3p
;
hsa-mir-32-5p
;
hsa-mir-92a-3p
;
hsa-mir-92b-3p
;
hsa-mir-4517
;
hsa-mir-3529-3p
;
hsa-mir-5688
;
hsa-mir-1277-5p
;
hsa-mir-297
;
hsa-mir-493-5p
;
hsa-mir-3924
;
hsa-mir-190a-3p
;
hsa-mir-6867-5p
;
hsa-mir-223-5p
;
hsa-mir-1257
;
hsa-mir-567
;
hsa-mir-511-3p
;
hsa-mir-4501
;
hsa-mir-5579-5p
;
hsa-mir-5011-5p
;
hsa-mir-5580-3p
;
hsa-mir-5583-3p
;
hsa-mir-3065-5p
;
hsa-mir-7-2-3p
;
hsa-mir-7-1-3p
Nearest miRNA
hsa-let-7f-2/Upstream/968347; hsa-mir-105-1/Downstream/927346;
Nearest TSS
ENST00000429181/Upstream/4210;
ENST00000477335/Downstream/91340;
Nearest CpG islands
None/Target,
chrX-CpG: 62/Upstream/63050
,
chrX-CpG: 76/Downstream/129958
Upstream sequence
tatctgctgggattttcgttgagattgtgttgattctacagatccatttggacagaagtaacatcttaccaatattgagttttccaatccatgcacatag
Downstream sequence
tatatgtctatttatgttggtattctttgatttcttttatcaggaatcaatagttttcagcatgcagtttctgtacatattttgttagatttatatttaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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