Basic Information
VIS ID
TVIS30009961
Fusion event
HIV-P2RY10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78215524/78960027 (Hg38)
End
78215524/78960027 (Hg38)
Orient
+
Location type
Intronic
Target gene
P2RY10
miRNAs that regulate target gene
hsa-mir-7641 ; hsa-mir-3686 ; hsa-mir-3607-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-1270 ; hsa-mir-129-5p ; hsa-mir-4434 ; hsa-mir-4470 ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-4645-5p ; hsa-mir-4673 ; hsa-mir-4742-5p ; hsa-mir-5703 ; hsa-mir-620 ; hsa-mir-6715a-3p ; hsa-mir-7850-5p
Nearest miRNA
hsa-let-7f-2/Upstream/58778; hsa-mir-105-1/Downstream/5265725;
Nearest TSS
ENST00000429181/Upstream/14606; ENST00000276077/Downstream/184636;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/820232, chrX-CpG: 27/Downstream/1375194
Upstream sequence
TTATGATAGAATAATGAGGCCACATTCTCAGGTCTTGAAGATCAGCCGGGACACTGACAATGCAGGCTTAAGGAGGCAGGACAATTTTTCAAGTGATGGG
Downstream sequence
GTTCCAAGATAAGAAGCCAGGACCCAAAGAGCAAAATGGCAGACAAAGGACAGGGATGGGAACCTAAAAAGTGAGGCTAAATTTCTACTACTGCAATTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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