Basic Information
VIS ID
TVIS30009967
Fusion event
HIV-CHM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
85223059/85968054 (Hg38)
End
85223059/85968054 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHM
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-let-7f-2/Upstream/64347; hsa-mir-105-1/Downstream/9095087;
Nearest TSS
ENST00000429181/Upstream/588311; ENST00000506327/Downstream/13755;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/723176, chrX-CpG: 66/Downstream/179885
Upstream sequence
CTGAGGAACAGGTGTTTAATTTATTCAGCACAGGTGTTCACCATTTATTTTTCAGCCATTTGCACCTTCTCTTACCCAATACGACTTGCTGCAGACATTG
Downstream sequence
TATTCTTTTACTTTGATGTTTATACTTTGTTCTAAGGCCATTTATTTCTGATTTTCACAGTATATATTATACTGCTACCCAGCTGTTTATTCCTAAAATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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