Basic Information
VIS ID
TVIS30009969
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
87616210/88361209 (Hg38)
End
87616210/88361209 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/2457502; hsa-mir-105-1/Downstream/6701932;
Nearest TSS
ENST00000429181/Upstream/610326; ENST00000373111/Downstream/386016;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2212336, chrX-CpG: 43/Downstream/3073394
Nearby gene
CPXCR1(No orient, 386016)
Upstream sequence
tttatatggcaataccctcataactgtgcactttaaaatagtaattttaatggttttttaaatcatatctcTATTTTTAAAAATATATACAAGTAGATac
Downstream sequence
attttactttaagtatacaacttattcatgtcaatcttttaaagtagaaatgatatctttgcacataatgtcctctaaataagttctgaatcatcttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate