Basic Information
VIS ID
TVIS30009970
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
88489665/89234666 (Hg38)
End
88489665/89234666 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/3330959; hsa-mir-105-1/Downstream/5828475;
Nearest TSS
ENST00000429181/Upstream/485348; ENST00000420327/Downstream/189072;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/3085793, chrX-CpG: 43/Downstream/2199937
Nearby gene
CPXCR1(No orient, 479880)
Upstream sequence
gcccaggctggaggtaatctcagctcactgtaagctccgtctctggggttcacgccattctcctgcctcagcctcccaagtagctgggactacagcaccc
Downstream sequence
accaccacgctcgcctaattttttgtatttttagtagagacagggtttcaccgtgttagccagggtggtctccatctcctgacctcatgatctgccctcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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