Basic Information
VIS ID
TVIS30009972
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.33
Reference genome
End
95560699/96305700 (Hg38)
Orient
-
Nearest miRNA
hsa-let-7f-2/Upstream/1242474; hsa-mir-105-1/Downstream/10334114;
Upstream sequence
ttaatcagagaactgagtccatttacattcagtattattattgataagggaagacttactgctgccattttgtttcttgttttctgattgctttgtaact
Downstream sequence
cctcgcttcctttctccctttcttactgtcatcttttgtagttaattgttctctgatagtatgtttaatttgttggtttttattagtttattataggttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate