VISDB Viral Integration Site DataBase

VIS ID

TVIS30009976

Fusion event

HIV-TRMT2B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q22.1

Reference genome

Start

End

100278552/101023563 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1207-5p ; hsa-mir-1247-3p ; hsa-mir-1909-3p ; hsa-mir-25-5p ; hsa-mir-34b-3p ; hsa-mir-3664-3p ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4763-3p ; hsa-mir-485-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-558 ; hsa-mir-658 ; hsa-mir-6722-3p ; hsa-mir-6783-5p ; hsa-mir-6808-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-940 ; hsa-mir-1262 ; hsa-mir-1273f ; hsa-mir-1273g-3p ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-3672 ; hsa-mir-367-3p ; hsa-mir-4701-3p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-4793-3p ; hsa-mir-500a-3p ; hsa-mir-508-5p ; hsa-mir-5186 ; hsa-mir-542-3p ; hsa-mir-6088 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6849-3p ; hsa-mir-6864-3p ; hsa-mir-766-3p ; hsa-mir-767-5p ; hsa-mir-7703 ; hsa-mir-8055 ; hsa-mir-873-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-let-7f-2/Upstream/5960337; hsa-mir-105-1/Downstream/5616251;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/94208, chrX-CpG: 33/Downstream/28062

Upstream sequence

GCTCACCTGACTTAATTTCTGGGGATGGAAAGTGATGATAGCCATTGTGTGCCCTTGGCTATTGGTGCGGACTGTGAGCTCACGCCAGTATCCACCTTCA

Downstream sequence

TGAAATACAAGGCAGGGCTCCAATGGAGACTGTCGAAGGAATACTTCATAGTACTAGGAAGAGAACCGAATTATTACACAAGCAAAACTAGCAAGTTTCA