Basic Information
VIS ID
TVIS30009978
Fusion event
HIV-MID2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
107098586/107855356 (Hg38)
End
107098586/107855356 (Hg38)
Orient
-
Location type
Intronic
Target gene
MID2
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-324-5p
Nearest miRNA
hsa-let-7f-2/Upstream/1215460; hsa-mir-105-1/Downstream/2199973;
Nearest TSS
ENST00000429181/Upstream/28942; ENST00000474517/Downstream/62146;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/28385, chrX-CpG: 37/Downstream/80644
Upstream sequence
TATTTTAAAGTTGTAAATTGTAAAGTGCTGTAAAGTGTGAGGTTTTAATCAATTGTCATCTACATCAAATCTTAGAGCAGAGCTTAGAGGAAGAGCTGAC
Downstream sequence
CTCTTCTTAAATGGACATAATAAAATAAAGATGTTATTTCTCTTTCTCAAGAGCATGAAACTTATACCATTTGGTTTTGTGTTGATTTTGTTGAAGAGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate