Basic Information
VIS ID
TVIS30009983
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
118107203/118973240 (Hg38)
End
118107203/118973240 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/586769; hsa-mir-105-1/Downstream/673498;
Nearest TSS
ENST00000429181/Upstream/133609; ENST00000371628/Downstream/1374;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/93924, chrX-CpG: 38/Downstream/266
Nearby gene
LONRF3(No orient, 1374)
Upstream sequence
GAGACCCGAGGGGGCCTGCCATAACCCAACTCTGAAACATGACTTAATCCCAAGTAAGATCAGCTCTAACATTTGTTCAGAAGCAAAAATGATGGATTCT
Downstream sequence
AAAGTTTGACTTCCCCAAGGTCATCTGGCTAAGAGGTGGCTGCAGCAGGGGGCAACAATAGGTCTTCAGGCCCCTGGGGCGGCAACCTGGCACTGCCCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate