VISDB Viral Integration Site DataBase

VIS ID

TVIS30009991

Fusion event

HIV-OCRL integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q26.1

Reference genome

Start

End

128670017/129536040 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-378a-3p ; hsa-mir-320a ; hsa-mir-10a-5p ; hsa-mir-95-5p ; hsa-mir-374a-5p ; hsa-mir-425-5p ; hsa-mir-374b-5p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-1245a ; hsa-mir-8079 ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-503-5p ; hsa-mir-646 ; hsa-mir-6838-5p ; hsa-mir-450b-5p ; hsa-mir-505-5p ; hsa-mir-4753-5p ; hsa-mir-6768-3p ; hsa-mir-4462 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-921 ; hsa-mir-3606-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-1251-3p ; hsa-mir-410-3p ; hsa-mir-8062 ; hsa-mir-7-2-3p ; hsa-mir-5688 ; hsa-mir-7-1-3p ; hsa-mir-495-3p

Nearest miRNA

hsa-let-7f-2/Upstream/8164987; hsa-mir-105-1/Downstream/4633338;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/12611, chrX-CpG: 43/Downstream/4116

Nearby gene

OCRL(No orient, 4235)

Upstream sequence

ctcagcctcccgagtaactgggactgtaggcacataccaccatgcccagctaattttattttattttatttttgtagagatgggggtctcgttagattgc

Downstream sequence

ccaggctgatctcaaacttcaaatggtccttctgctttggcctcccaaagtgctgggattgtagttgtgaaccactgtgctcggctctagtcttttttaa