Basic Information
VIS ID
TVIS30009993
Fusion event
HIV-ENOX2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
129782402/130648428 (Hg38)
End
129782402/130648428 (Hg38)
Orient
+
Location type
Intronic
Target gene
ENOX2
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-4666a-5p ; hsa-mir-8068 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-5087 ; hsa-mir-4764-5p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-1265 ; hsa-mir-376c-3p
Nearest miRNA
hsa-let-7f-2/Upstream/9277375; hsa-mir-105-1/Downstream/3520950;
Nearest TSS
ENST00000429181/Upstream/237225; ENST00000423277/Downstream/19273;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/246229, chrX-CpG: 37/Downstream/254345
Upstream sequence
tcgggaggctgaggcaggagaatcccttgaacccaggaggcagaggttgtggtgagctgagatggcaccattgcactccagcctgggcaacaagagcgaa
Downstream sequence
actccgtctccaaaaaaaaaaagaaGGAATTAAACAATTAAAATTATTAGCTATAAATGGTGAAAGAAGGTTTTATCTAAAGGAATTTCAAAGAGAAGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate