Basic Information
VIS ID
TVIS30009998
Fusion event
HIV-FAM122B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
133914942/134780912 (Hg38)
End
133914942/134780912 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM122B
miRNAs that regulate target gene
hsa-mir-425-5p ; hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-3148 ; hsa-mir-3610 ; hsa-mir-144-3p ; hsa-mir-548e-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-299-3p ; hsa-mir-4491 ; hsa-mir-4657
Nearest miRNA
hsa-let-7f-2/Upstream/234201; hsa-mir-105-1/Downstream/1769966;
Nearest TSS
ENST00000429181/Upstream/16590; ENST00000494709/Downstream/8192;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/229479, chrX-CpG: 53/Downstream/15845
Upstream sequence
ACACTGAAGGCCCTTAAAGACCTAAACTAGGATGAGTAAGATTTAAAAAACATGTGTGTGACTAGACCGTAAGAATCAGGAAATGTTATTATAAAAATGA
Downstream sequence
AACCTTAGCATTGTTCTGAAATATTTCATAATTTTCTAAAAGATAACAATAGATAATGCTAATCAGAGAATACTATGCTTAAGAGAATCCTGGTATCCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate