Basic Information
VIS ID
TVIS30010005
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
137411769/138329610 (Hg38)
End
137411769/138329610 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1778650; hsa-mir-105-1/Downstream/338101;
Nearest TSS
ENST00000429181/Upstream/755564; ENST00000411940/Downstream/297467;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/754684, chrX-CpG: 84/Downstream/381323
Nearby gene
LINC00889(No orient, 285123)
Upstream sequence
ATCCTTTCCTGCCATCAAGGGCATGACACCAAGGTACAGCACACAAACAGAAAAGATGTGTGTTGAGTTTTGAAAAGGGAATAGAAGTTTGCCAAATTAA
Downstream sequence
GAAATAGAGAAATGGATTCtgctgtggactgaactgtgtctccccccacccaaattcatatgttaaagctctaacctcatatgattgtccttgggaaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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