VISDB Viral Integration Site DataBase

VIS ID

TVIS30010009

Fusion event

HIV-ZNF275 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q28

Reference genome

Start

End

152607529/153342071 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRAXE ; FRAXF

Target gene

miRNAs that regulate target gene

hsa-mir-221-3p ; hsa-mir-320a ; hsa-mir-31-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-224-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-522-3p ; hsa-mir-545-3p ; hsa-mir-548p ; hsa-mir-4275 ; hsa-mir-6792-5p ; hsa-mir-6838-5p ; hsa-mir-7-5p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-619-5p ; hsa-mir-1224-5p ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-320d ; hsa-mir-320e ; hsa-mir-23c ; hsa-mir-4429 ; hsa-mir-6506-5p ; hsa-mir-6079 ; hsa-mir-187-5p ; hsa-mir-222-3p ; hsa-mir-142-5p ; hsa-mir-548v ; hsa-mir-548at-5p ; hsa-mir-5590-3p ; hsa-mir-518e-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-4751 ; hsa-mir-5004-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-873-5p ; hsa-mir-122-3p ; hsa-mir-889-3p ; hsa-mir-4511 ; hsa-mir-4671-5p ; hsa-mir-561-3p ; hsa-mir-3133 ; hsa-mir-7850-5p ; hsa-mir-6077 ; hsa-mir-4714-3p ; hsa-mir-410-3p ; hsa-mir-6509-3p ; hsa-mir-6885-3p ; hsa-mir-18a-3p ; hsa-mir-519d-5p ; hsa-mir-3121-5p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-6890-3p ; hsa-mir-6782-3p

Nearest miRNA

hsa-let-7f-2/Upstream/6534; hsa-mir-1184-1/Downstream/639026;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/7453, chrX-CpG: 61/Downstream/5246

Upstream sequence

tcaaatttggaaaactgtcctgccattatttcttcaactgtatttttcatccctccccccacttttcctcaccttctcaggttccagttatgtaggtgtt

Downstream sequence

agaccactttctcttaccccaggtcattaagatgctgtttgtttttaaaaactctttttctctctgagcttcatttgagatcatttctattgctatgtca