Basic Information
VIS ID
TVIS30010018
Fusion event
HIV-TEX28P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153477321/154211851 (Hg38)
End
153477321/154211851 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
TEX28P1
Nearest miRNA
hsa-let-7f-2/Upstream/191862; hsa-mir-1184-1/Downstream/238469;
Nearest TSS
ENST00000429181/Upstream/21793; ENST00000488220/Downstream/7905;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/74652, chrX-CpG: 32/Downstream/83537
Nearby gene
OPN1MW2(No orient, 7882)
Upstream sequence
TGCAGCGAGGGGGACAGAATGTGGCACCCCCTGAGGGCCCATGGAAACCCAGAGAACGGTCCCAATAGGAATGGAGAGAATCCGTTGAGAGATTGGGTTT
Downstream sequence
GCCtttttttttttttttttttttttCCTCCAATTGGTAGGCCCTAGCCTTATCTTAGAGGGAAAGAAAATCGAGCTAGggcagggtgaggtggctcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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