Basic Information
VIS ID
TVIS30010019
Fusion event
HIV-OPN1MW integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153487196/154221727 (Hg38)
End
153487196/154221727 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
OPN1MW
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7f-2/Upstream/201738; hsa-mir-1184-1/Downstream/228593;
Nearest TSS
ENST00000429181/Upstream/1930; ENST00000430419/Downstream/5469;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/84528, chrX-CpG: 32/Downstream/73661
Upstream sequence
aggtccacacattcagattgactgatatgccttttgactacctttgaatctagaggttccctttctatctccctgcaatttatttgtggaagcaagcaag
Downstream sequence
tcgttcatgacgtagcctaacaggcccctctgacgttgttcattatgatttttctgtaaattggtagttgatctgaggatctggccagaggcaggttgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate