Basic Information
VIS ID
TVIS30010029
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
154643808/155414147 (Hg38)
End
154643808/155414147 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/30949; hsa-mir-1184-3/Downstream/43370;
Nearest TSS
ENST00000429181/Upstream/32032; ENST00000447347/Downstream/44525;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/31159, chrX-CpG: 142/Downstream/43579
Nearby gene
F8A1(No orient, 30358)
Upstream sequence
agaaaataaaaagacaacccacagaatgagataaaatattttcaaatcacatatcgaataagggtcttttccataatttataaagagctcttagaactca
Downstream sequence
ataataaaaagacaatccaattgaaaaaatgggcaaagtatttgaatacacatttctccaaatagacatgaatgaccaataagcacatgaaaagattgtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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