Basic Information
VIS ID
TVIS30010030
Fusion event
HIV-TMLHE integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
154737871/155508210 (Hg38)
End
154737871/155508210 (Hg38)
Orient
+
Location type
Intronic
Target gene
TMLHE
miRNAs that regulate target gene
hsa-mir-6875-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-340-5p ; hsa-mir-496 ; hsa-mir-4742-3p ; hsa-mir-4729 ; hsa-mir-664a-3p ; hsa-mir-3163 ; hsa-mir-660-5p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-3671 ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-5088-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-5692a ; hsa-mir-494-3p ; hsa-mir-342-3p ; hsa-mir-1285-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac
Nearest miRNA
hsa-let-7f-2/Upstream/50595;
Nearest TSS
ENST00000429181/Upstream/15721; ENST00000302805/Downstream/37067;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/48083, chrX-CpG: 44/Downstream/104241
Upstream sequence
gaggaaggagttcagtttagaggcatgttaGAACAGCTAATCATATACAGTTTCTGAATATGTTAACAGGGAAAGGTAAGGTGACTATTAATTGACTGGA
Downstream sequence
AAACTAAGGTAGAATTTTCAAACTTATGAGGGaaaataaaattaatagtaatttaatcaaatatgcaaaactaagaaaaagtaaaaagcaaattaaaata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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