Basic Information
VIS ID
TVIS30010031
Fusion event
HIV-P2RY8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
1552990/1484097 (Hg38)
End
1552990/1484097 (Hg38)
Orient
-
Location type
Intronic
Target gene
P2RY8
Nearest miRNA
hsa-mir-3690-2/Upstream/190105; hsa-mir-12120/Downstream/1125094;
Nearest TSS
ENST00000430575/Downstream/1303602;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/17417, chrY-CpG: 19/Downstream/52889
Upstream sequence
GCTGGGCTCCCCTCAACTCAAAGCTGGGCTCCCTTAGACCCAAAGCTGGACTCCCCTAAACCCAAAGCTGGGCCCTTATATACCTAAAAAGCTGGGTTCC
Downstream sequence
CCTAAACCCAAAGCTGGGCTCCCCTAAACTCAGGAAAGATTTTCATCTTTGAACACAAAGGAGTGTGTTTTTCTCTTGCTCCCTGGACCCAAACCCCCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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