Basic Information
VIS ID
TVIS30010034
Fusion event
HIV-ARSDP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
14486415/12365684 (Hg38)
End
14486415/12365684 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARSDP1
Nearest miRNA
hsa-mir-3690-2/Upstream/7759456; hsa-mir-12120/Downstream/1113493;
Nearest TSS
ENST00000430575/Upstream/2454886; ENST00000417071/Downstream/296650;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/378910, chrY-CpG: 122/Downstream/54632
Upstream sequence
gcaattaaaaacataaatctcctttctttgcttccttatttcacatgagcttggaaggtctgcactgctctccctagaaagcctcataatgtttgtcata
Downstream sequence
agttgtctcatgtactctgtgtgtgtgtgttggtgtgtgtgtgggtgtgtgtgtgtgtgtgtgacgtcacccatctcaacatcaacaccaaacttaggat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate