Basic Information
VIS ID
TVIS30010035
Fusion event
HIV-ANOS2P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
GRCh37/hg19
Start
15992536/13880656 (Hg38)
End
15992536/13880656 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANOS2P
Nearest miRNA
hsa-mir-12120/Upstream/401390;
Nearest TSS
ENST00000430575/Upstream/177089; ENST00000250823/Downstream/105857;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/127702, chrY-CpG: 22/Downstream/643203
Nearby gene
VCY1B(No orient, 105116)
Upstream sequence
TGTTTGTGTCATGAAACACAAGAGGTTAAGTGATGAAACCTGAAATTTATCTTTCTGAAATCCAATGTTTTATCCTCCGGTGCTGAAAGCACCACAAATG
Downstream sequence
ATCATCAATAAAAGGAACTATTTTTCTTCAAGGCTGAAATTGGGTATACATGCTAAATATGTAGCATATTTTACATTGGTAATCACACAAATTGTATAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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