Basic Information
VIS ID
TVIS30010039
Fusion event
HIV-chrY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.222
Reference genome
GRCh37/hg19
Start
19487470/17375590 (Hg38)
End
19487470/17375590 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12120/Upstream/3896324;
Nearest TSS
ENST00000430575/Upstream/2571557; ENST00000421205/Downstream/125368;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/1918853, chrY-CpG: 21/Downstream/142747
Upstream sequence
ttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggc
Downstream sequence
tgggtcaaatggtatttctagttctagatccctgaggaattgccacactgacttccacaatggttgaactagtttacagtccaccaacagtgtaaaagtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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