Basic Information
VIS ID
TVIS30010040
Fusion event
HIV-chrY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.223
Reference genome
GRCh37/hg19
Start
22110764/19948878 (Hg38)
End
22110764/19948878 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12120/Upstream/6469612;
Nearest TSS
ENST00000430575/Upstream/203939; ENST00000465253/Downstream/569529;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/381208, chrY-CpG: 16/Downstream/627061
Nearby gene
KDM5D(No orient, 203939)
Upstream sequence
agggataatggtctttagttttctcttttttattgtattcttgtcctttgttggtcaaggtaatactcacctcataaaataagttagggagtattccttt
Downstream sequence
ctcctattttgaaatagttggaggagaattggttttacttctttgtaatttggtacactgcaggaattaggctttccaatcctagagtttttttgcattg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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