VISDB Viral Integration Site DataBase

VIS ID

TVIS30010043

Fusion event

HIV-SSU72 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.33

Reference genome

Start

End

1507208/1571828 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-16-5p ; hsa-mir-155-5p ; hsa-mir-3148 ; hsa-mir-6124 ; hsa-mir-4796-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-4533 ; hsa-mir-1252-5p ; hsa-mir-873-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-513b-3p ; hsa-mir-651-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-548l ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-2277-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1249-5p ; hsa-mir-1321 ; hsa-mir-1343-5p ; hsa-mir-149-3p ; hsa-mir-1538 ; hsa-mir-3150a-3p ; hsa-mir-3175 ; hsa-mir-3714 ; hsa-mir-4269 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4745-3p ; hsa-mir-4747-5p ; hsa-mir-4756-5p ; hsa-mir-4779 ; hsa-mir-4783-3p ; hsa-mir-491-5p ; hsa-mir-5196-5p ; hsa-mir-5582-5p ; hsa-mir-605-3p ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6715b-5p ; hsa-mir-6763-5p ; hsa-mir-6768-5p ; hsa-mir-6785-5p ; hsa-mir-6786-5p ; hsa-mir-6797-5p ; hsa-mir-6808-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-92a-2-5p ; hsa-mir-939-5p ; hsa-mir-940 ; hsa-mir-9500

Nearest miRNA

hsa-mir-12136/Upstream/232120; hsa-mir-101-1/Downstream/1556147;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/10222, chr1-CpG: 139/Downstream/2274

Upstream sequence

GGTTATGACTGGCATGTCTTTAAAGTAGCCGCTAAACCTGATTTTATTAACAAGATAGCTAAATAAtttttttttttgagacagagtctcgctctgtcac

Downstream sequence

ccaggctggagtgcagtggccggatctcagctcactgcaagctctgcttcctgcttcccgggttcacgccattctcctgcctcagcctcctgagcagctg