Basic Information
VIS ID
TVIS30010077
Fusion event
HIV-DAB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p32.2
Reference genome
GRCh37/hg19
Start
58387070/57921398 (Hg38)
End
58387070/57921398 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
DAB1
Nearest miRNA
hsa-mir-12136/Upstream/2695675; hsa-mir-101-1/Downstream/1811829;
Nearest TSS
ENST00000473358/Upstream/37313; ENST00000419596/Downstream/138741;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/496433, chr1-CpG: 87/Downstream/328202
Upstream sequence
GATTGGAATAGTATTTGCCACTTGGGAAGGAAATCAGTCAAGTAACTTTTTACTGTAAGCATTTTTATATTATTTTAATTGTTTTTACCAGGAGGATGTG
Downstream sequence
TTCCTTTTATAGCCACAGAAATATAAGCATCATAAAGATGTTGACTCCCTAACTAGACATTAAGTTCCAGGGGAGCAGAAAcacatccctctccttgtct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate