Basic Information
VIS ID
TVIS30010087
Fusion event
HIV-CEPT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
111709036/111166414 (Hg38)
End
111709036/111166414 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEPT1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-23b-3p ; hsa-mir-183-5p ; hsa-mir-26a-5p ; hsa-mir-670-3p ; hsa-mir-580-3p ; hsa-mir-6770-5p ; hsa-mir-4797-3p ; hsa-mir-1253 ; hsa-mir-545-5p ; hsa-mir-100-3p ; hsa-mir-186-5p ; hsa-mir-3133
Nearest miRNA
hsa-mir-101-1/Upstream/1567447; hsa-mir-11399/Downstream/1295356;
Nearest TSS
ENST00000473358/Upstream/18737; ENST00000483427/Downstream/6724;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/25733, chr1-CpG: 91/Downstream/37277
Upstream sequence
CTAGTCTATACTGCTACTGTTTTGTGTGTTATCTGTGTTTCCAAACTTTTTAAGTGATTGAACTGGATGTTTTACTTACTTTTATCACTAGTAAACTAAT
Downstream sequence
CCAATGTAGTAGAGTATTATAATGCTGGTGTGGAATTAGGGAAGAGAAAGAGGAAAAAGGAAAACTTCTGGACTAAAGATTATCAGGAAATAGGATAAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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