Basic Information
VIS ID
TVIS30010088
Fusion event
HIV-AP4B1-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
114375193/113832571 (Hg38)
End
114375193/113832571 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
AP4B1-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/950442; hsa-mir-1182/Downstream/2727453;
Nearest TSS
ENST00000473358/Upstream/9158; ENST00000419536/Downstream/24064;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/19893, chr1-CpG: 61/Downstream/72261
Upstream sequence
ctggccTGTTGTCATGttttttagagacagcatcttgctctgtcatacaggctgggtgcagtggtgccattatagctcactgcagcctcaaattcctggC
Downstream sequence
AAAGCCCATGTTTTTTAACCTTTATATTATCTGTATATGTATTTGAATAATATGACAGTATGAATAAATATGTTAAGGGCAACTACCACTTGTGATAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate