Basic Information
VIS ID
TVIS30010091
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
121485111/121743313 (Hg38)
End
121485111/121743313 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/4648585; hsa-mir-1182/Downstream/24107274;
Nearest TSS
ENST00000473358/Upstream/162789; ENST00000443018/Downstream/21757199;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/223586, chr1-CpG: 312/Downstream/3342196
Upstream sequence
aaagtctgtaagtggatattctgacatcttgtggccttcgttggaaacgggatttcttcctattctgctagacagatgaattctcagtaacttccttgtg
Downstream sequence
ttgtgtgtattcaactcacagagttgaacgatcctttacacagagcagacttgaaacactctttttgtggaatttgcaagtggagatttcagccgctttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate