Basic Information
VIS ID
TVIS30010092
Fusion event
HIV-CHD1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
146731428/147259774 (Hg38)
End
146731428/147259774 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
CHD1L
miRNAs that regulate target gene
hsa-mir-320a
Nearest miRNA
hsa-mir-101-1/Upstream/1409129; hsa-mir-1182/Downstream/1074705;
Nearest TSS
ENST00000473358/Upstream/16724; ENST00000485113/Downstream/11130;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/16146, chr1-CpG: 81/Downstream/339682
Nearest cancer related gene
CHD1L(OG, No orient, 0)
Upstream sequence
TGCACATGTAGCCTCTCAGGAAGGTAATTTGGTGGCATTTGTAATAGAAGGGGCTTACTGTTAAGTCTTTTTAATAACAGTCACAGTTTTGTAGTAAGAC
Downstream sequence
TTTTGATTGTGAAATATGTGTTTAAATTACACAAAACTGAAAGCTTGGGTTTTCTCTCACAGATTCCCTTGGAGTGTTCTTGTTGTGGATGAAGCTCACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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