Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene156066433155946851156007070155965870155984883155991390156001787155958920155963338155978799155982986156000673156004283155988801155991882155956937155958674156004651156005836155993427155994271155964849155965479155985169155985764156006642
Basic Information
VIS ID
TVIS30010099
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155976433/156006642 (Hg38)
End
155976433/156006642 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/55306; hsa-mir-1182/Downstream/413699;
Nearest TSS
ENST00000473358/Upstream/4078; ENST00000489664/Downstream/428;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/27943, chr1-CpG: 33/Downstream/13956
Nearby gene
SSR2(No orient, 2406)
Upstream sequence
tcctgatacgcatatcatataaacctatcggacataaccctattggaagtcaagaagcacctgTATTATGTTCCAGAGTTATGAAGTTTACCCTATTCTC
Downstream sequence
TAAGCCAGAACCCCGCCACCACCCCCCACTCCCCCCGCCCATAGGTTAACTCATTACATTTTCCTTGGAGACTACACAGATGGAAAATACCATTTCCTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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