Basic Information
VIS ID
TVIS30010102
Fusion event
HIV-LOC105371468 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160506710/160536920 (Hg38)
End
160506710/160536920 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371468
Nearest miRNA
hsa-mir-101-1/Upstream/636841; hsa-mir-1182/Downstream/690266;
Nearest TSS
ENST00000473358/Upstream/13658; ENST00000446952/Downstream/153;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/117324, chr1-CpG: 24/Downstream/264973
Nearby gene
CD84(No orient, 4174)
Upstream sequence
AAGTTGTAAAAGTTTAACCCGAgccagtcatttgcttatttgctctcagctctattcccacccttctgtgttccttgtttttcagaaggttagaagtctg
Downstream sequence
caaactacatttatcatttccattgtcagatggcttctgattagattttgtcactgggtggtattggttaaagttggatggaaggaataaattatatatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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