Basic Information
VIS ID
TVIS30010108
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
182007787/182038652 (Hg38)
End
182007787/182038652 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1600262; hsa-mir-1182/Downstream/10677676;
Nearest TSS
ENST00000473358/Upstream/225947; ENST00000428646/Downstream/23060;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8446, chr1-CpG: 91/Downstream/17817
Nearby gene
ZNF648(No orient, 15918)
Upstream sequence
gtatcttcttgtgcttttatttcaatgctcaatttacataaaaaccatataataaccttttgaatttagttaatatgttcacacacagaatttcttttgc
Downstream sequence
aagatgaatttttacagcctttccacagcttgaactttgaattttatcttatctaattcaaaacaatcctttaaccctaagaaagaatttacatttccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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