Basic Information
VIS ID
TVIS30010116
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.3
Reference genome
GRCh37/hg19
Start
234851331/234715584 (Hg38)
End
234851331/234715584 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/409045; hsa-mir-1537/Downstream/474450;
Nearest TSS
ENST00000473358/Upstream/6201; ENST00000642107/Downstream/8458;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/104306, chr1-CpG: 30/Downstream/388655
Nearby gene
LINC01132(No orient, 8458)
Upstream sequence
TTTCCACTTCCTTTGTTCTCCTACAGTGAGGTCTTTGTCCTGAGTTGAGgggaggacagattttggtgggaagatgatctgagtttaaaggggctctgag
Downstream sequence
agatccacatgcagctgtctagtaggttaatgggaatacccatccaacactctggaaagaggtccttgctggagatggaaatctagggtccttcacattg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate