Basic Information
VIS ID
TVIS30010120
Fusion event
HIV-MIR5096 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.3
Reference genome
GRCh37/hg19
Start
235841293/235677993 (Hg38)
End
235841293/235677993 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1H
Target gene
MIR5096
Nearest miRNA
hsa-mir-101-1/Upstream/487877; hsa-mir-1537/Downstream/175007;
Nearest TSS
ENST00000473358/Upstream/27239; ENST00000412098/Downstream/34407;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/26805, chr1-CpG: 113/Downstream/188294
Upstream sequence
tattttatattttacatattctcctataagctttttctaatcttgacattgtcttcaaaataatttttaatgatgttataatattctatacagttagtac
Downstream sequence
cccacaatttacaactatccttcattgatagacacttaaaattgtttctatttttttcaaattatagataataccataaattcttcatgtataaaAGGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate