Basic Information
VIS ID
TVIS30010122
Fusion event
HIV-KIF28P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
246935524/246772222 (Hg38)
End
246935524/246772222 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1I
Target gene
KIF28P
Nearest miRNA
hsa-mir-101-1/Upstream/3425967; hsa-mir-3124/Downstream/429745;
Nearest TSS
ENST00000473358/Upstream/48175; ENST00000567832/Downstream/79;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/47496, chr1-CpG: 34/Downstream/16690
Nearby gene
SCCPDH(No orient, 4084)
Upstream sequence
CAGTAAGTCACCTAGGAGCAGTTTTGTTTCGGATGACCCTAAGTTACTGCCAGTAGGGAAAACTGGTGAGATAAGTCAAATATTTTCCACTGGAATGTTA
Downstream sequence
CTTCCTTAGTGTTTTAATACTGTCGAAGGAGTATTAAAGGAGTCTTGAGGGGCCAGTGGGTGTAGGGGCTCTCCCATTGGTAGGGTTTTGCCGATGCTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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