Basic Information
VIS ID
TVIS30010123
Fusion event
HIV-ZMYND11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
251533/205593 (Hg38)
End
251533/205593 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZMYND11
miRNAs that regulate target gene
hsa-mir-361-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-324-5p ; hsa-mir-125b-5p ; hsa-mir-27b-3p ; hsa-mir-222-3p ; hsa-mir-10b-5p ; hsa-mir-548q ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-6828-5p ; hsa-mir-138-5p ; hsa-mir-1468-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-548aj-5p ; hsa-mir-4484 ; hsa-mir-548an ; hsa-mir-4698 ; hsa-mir-548aw ; hsa-mir-6768-3p
Nearest miRNA
hsa-mir-107/Downstream/436096;
Nearest TSS
ENST00000439456/Upstream/7652; ENST00000488275/Downstream/34369;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/69081, chr10-CpG: 32/Downstream/94971
Nearest cancer related gene
ZMYND11(TSG, No orient, 0)
Upstream sequence
agccagggcaacatagtgagaccctgtttctacaaaaaattaaaaagttagtcaggtgtagtggtgtgtggctgtaatcccagcttctcaggaggctgag
Downstream sequence
gtgggaggagcacttgaggatgggaggtcaagcctgcagtgagccatgattgtgctattgtactgcagcctgggtggcagagtgagaccctgtacaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate